IL_4V8P_519

3D structure

PDB id

4V8P (explore in PDB, NAKB, or RNA 3D Hub)

Description

T.thermophila 60S ribosomal subunit in complex with initiation factor 6.

Experimental method

X-RAY DIFFRACTION

Resolution

3.52 Å

Loop

Sequence

AGC*GAU

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V8P_519 not in the Motif Atlas

Homologous match to IL_8C3A_074

Geometric discrepancy: 0.1705

The information below is about IL_8C3A_074

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_44258.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

301

Unit IDs

4V8P|1|H1|A|1685
4V8P|1|H1|G|1686
4V8P|1|H1|C|1687
*
4V8P|1|H1|G|1812
4V8P|1|H1|A|1813
4V8P|1|H1|U|1814

Current chains

Chain H1

26S RRNA

Nearby chains

Chain GO

RPL19

Chain GY

RPL37A

Chain HL

RPL34