IL_4V8P_527

3D structure

PDB id

4V8P (explore in PDB, NAKB, or RNA 3D Hub)

Description

T.thermophila 60S ribosomal subunit in complex with initiation factor 6.

Experimental method

X-RAY DIFFRACTION

Resolution

3.52 Å

Loop

Sequence

AAG*CCU

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V8P_527 not in the Motif Atlas

Homologous match to IL_5TBW_075

Geometric discrepancy: 0.1741

The information below is about IL_5TBW_075

Detailed Annotation

Isolated tWW turn

Broad Annotation

No text annotation

Motif group

IL_54997.8

Basepair signature

cWW-tWW-cWW

Number of instances in this motif group

8

Unit IDs

4V8P|1|H1|A|1919
4V8P|1|H1|A|1920
4V8P|1|H1|G|1921
*
4V8P|1|H1|C|2333
4V8P|1|H1|C|2334
4V8P|1|H1|U|2335

Current chains

Chain H1

26S RRNA

Nearby chains

Chain GB

RIBOSOMAL PROTEIN L3

Chain GJ

RPL23

Chain GT

RPL24