IL_4V8P_546

3D structure

PDB id

4V8P (explore in PDB, NAKB, or RNA 3D Hub)

Description

T.thermophila 60S ribosomal subunit in complex with initiation factor 6.

Experimental method

X-RAY DIFFRACTION

Resolution

3.52 Å

Loop

Sequence

GGC*GUC

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V8P_546 not in the Motif Atlas

Homologous match to IL_8C3A_101

Geometric discrepancy: 0.2015

The information below is about IL_8C3A_101

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_76273.2

Basepair signature

cWW-L-R-cWW

Number of instances in this motif group

14

Unit IDs

4V8P|1|H1|G|2437
4V8P|1|H1|G|2438
4V8P|1|H1|C|2439
*
4V8P|1|H1|G|2498
4V8P|1|H1|U|2499
4V8P|1|H1|C|2500

Current chains

Chain H1

26S RRNA

Nearby chains

Chain GF

RPL7A

Chain HQ

60S RIBOSOMAL PROTEIN L36