IL_4V8P_547
3D structure
- PDB id
- 4V8P (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- T.thermophila 60S ribosomal subunit in complex with initiation factor 6.
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.52 Å
Loop
- Sequence
- GUGAAGA*UUGC
- Length
- 11 nucleotides
- Bulged bases
- 4V8P|1|H1|G|2517, 4V8P|1|H1|U|2574, 4V8P|1|H1|G|2575
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_4V8P_547 not in the Motif Atlas
- Homologous match to IL_8C3A_106
- Geometric discrepancy: 0.2696
- The information below is about IL_8C3A_106
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_74114.1
- Basepair signature
- cWW-cWS-cWW-L-R
- Number of instances in this motif group
- 2
Unit IDs
4V8P|1|H1|G|2515
4V8P|1|H1|U|2516
4V8P|1|H1|G|2517
4V8P|1|H1|A|2518
4V8P|1|H1|A|2519
4V8P|1|H1|G|2520
4V8P|1|H1|A|2521
*
4V8P|1|H1|U|2573
4V8P|1|H1|U|2574
4V8P|1|H1|G|2575
4V8P|1|H1|C|2576
Current chains
- Chain H1
- 26S RRNA
Nearby chains
- Chain G2
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain GA
- RPL8
- Chain GF
- RPL7A
- Chain GR
- RPL23A
Coloring options: