IL_4V8P_548

3D structure

PDB id

4V8P (explore in PDB, NAKB, or RNA 3D Hub)

Description

T.thermophila 60S ribosomal subunit in complex with initiation factor 6.

Experimental method

X-RAY DIFFRACTION

Resolution

3.52 Å

Loop

Sequence

AU*AUU

Length

5 nucleotides

Bulged bases

4V8P|1|H1|U|2562

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V8P_548 not in the Motif Atlas

Geometric match to IL_2PN3_003

Geometric discrepancy: 0.2676

The information below is about IL_2PN3_003

Detailed Annotation

Single bulged U

Broad Annotation

No text annotation

Motif group

IL_89505.4

Basepair signature

cWW-L-cWW

Number of instances in this motif group

117

Unit IDs

4V8P|1|H1|A|2557
4V8P|1|H1|U|2558
*
4V8P|1|H1|A|2561
4V8P|1|H1|U|2562
4V8P|1|H1|U|2563

Current chains

Chain H1

26S RRNA

Nearby chains

Chain HN

RPL27