IL_4V8P_553

3D structure

PDB id

4V8P (explore in PDB, NAKB, or RNA 3D Hub)

Description

T.thermophila 60S ribosomal subunit in complex with initiation factor 6.

Experimental method

X-RAY DIFFRACTION

Resolution

3.52 Å

Loop

Sequence

CUU*AG

Length

5 nucleotides

Bulged bases

4V8P|1|H1|U|2761

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V8P_553 not in the Motif Atlas

Geometric match to IL_4V9F_107

Geometric discrepancy: 0.3247

The information below is about IL_4V9F_107

Detailed Annotation

Single bulged U

Broad Annotation

No text annotation

Motif group

IL_97561.2

Basepair signature

cWW-L-cWW

Number of instances in this motif group

147

Unit IDs

4V8P|1|H1|C|2760
4V8P|1|H1|U|2761
4V8P|1|H1|U|2762
*
4V8P|1|H1|A|2774
4V8P|1|H1|G|2775

Current chains

Chain H1

26S RRNA

Nearby chains

Chain GK

60S RIBOSOMAL PROTEIN L27A

Chain GN

RPL18

Chain HC

60S RIBOSOMAL PROTEIN L36A

Chain HU

RPL13