IL_4V8P_573

3D structure

PDB id

4V8P (explore in PDB, NAKB, or RNA 3D Hub)

Description

T.thermophila 60S ribosomal subunit in complex with initiation factor 6.

Experimental method

X-RAY DIFFRACTION

Resolution

3.52 Å

Loop

Sequence

GAGCG*UUAAC

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V8P_573 not in the Motif Atlas

Geometric match to IL_3IGI_002

Geometric discrepancy: 0.2006

The information below is about IL_3IGI_002

Detailed Annotation

Triple sheared

Broad Annotation

No text annotation

Motif group

IL_50730.2

Basepair signature

cWW-tSH-tHS-tHS-cWW

Number of instances in this motif group

19

Unit IDs

4V8P|1|H1|G|3189
4V8P|1|H1|A|3190
4V8P|1|H1|G|3191
4V8P|1|H1|C|3192
4V8P|1|H1|G|3193
*
4V8P|1|H1|U|3217
4V8P|1|H1|U|3218
4V8P|1|H1|A|3219
4V8P|1|H1|A|3220
4V8P|1|H1|C|3221

Current chains

Chain H1

26S RRNA

Nearby chains

Chain GI

60S RIBOSOMAL PROTEIN L13A

Chain HE

RPL6

Chain HF

RPL14