IL_4V8P_574

3D structure

PDB id

4V8P (explore in PDB, NAKB, or RNA 3D Hub)

Description

T.thermophila 60S ribosomal subunit in complex with initiation factor 6.

Experimental method

X-RAY DIFFRACTION

Resolution

3.52 Å

Loop

Sequence

GGAAG*UGAC

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V8P_574 not in the Motif Atlas

Geometric match to IL_4LFB_062

Geometric discrepancy: 0.3011

The information below is about IL_4LFB_062

Detailed Annotation

UAA/GAN variation

Broad Annotation

UAA/GAN variation

Motif group

IL_77691.7

Basepair signature

cWW-tSH-L-R-L-cWW

Number of instances in this motif group

7

Unit IDs

4V8P|1|H1|G|3195
4V8P|1|H1|G|3196
4V8P|1|H1|A|3197
4V8P|1|H1|A|3198
4V8P|1|H1|G|3199
*
4V8P|1|H1|U|3212
4V8P|1|H1|G|3213
4V8P|1|H1|A|3214
4V8P|1|H1|C|3215

Current chains

Chain H1

26S RRNA

Nearby chains

Chain GI

60S RIBOSOMAL PROTEIN L13A