IL_4V8P_601
3D structure
- PDB id
- 4V8P (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- T.thermophila 60S ribosomal subunit in complex with initiation factor 6.
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.52 Å
Loop
- Sequence
- GAAAACA*UUAAGC
- Length
- 13 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_4V8P_601 not in the Motif Atlas
- Homologous match to IL_8P9A_365
- Geometric discrepancy: 0.182
- The information below is about IL_8P9A_365
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_18487.1
- Basepair signature
- cWW-L-R-L-R-L-R-L-cWW-cWW
- Number of instances in this motif group
- 2
Unit IDs
4V8P|1|G3|G|21
4V8P|1|G3|A|22
4V8P|1|G3|A|23
4V8P|1|G3|A|24
4V8P|1|G3|A|25
4V8P|1|G3|C|26
4V8P|1|G3|A|27
*
4V8P|1|G3|U|52
4V8P|1|G3|U|53
4V8P|1|G3|A|54
4V8P|1|G3|A|55
4V8P|1|G3|G|56
4V8P|1|G3|C|57
Current chains
- Chain G3
- 5S RRNA
Nearby chains
- Chain GD
- 60S RIBOSOMAL PROTEIN L11
- Chain GM
- 60S RIBOSOMAL PROTEIN L5
Coloring options: