IL_4V8Q_013
3D structure
- PDB id
- 4V8Q (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Complex of SmpB, a tmRNA fragment and EF-Tu-GDP-Kirromycin with the 70S ribosome
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.1 Å
Loop
- Sequence
- GAAC*GAGUGAAAUAGAGC
- Length
- 18 nucleotides
- Bulged bases
- 4V8Q|1|AA|U|504, 4V8Q|1|AA|G|508
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_4V8Q_013 not in the Motif Atlas
- Homologous match to IL_7RQB_014
- Geometric discrepancy: 0.0738
- The information below is about IL_7RQB_014
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_60992.6
- Basepair signature
- cWW-cWS-tSH-L-tHH-tWH-cWW-tSS-tSH-L-L
- Number of instances in this motif group
- 6
Unit IDs
4V8Q|1|AA|G|481
4V8Q|1|AA|A|482
4V8Q|1|AA|A|483
4V8Q|1|AA|C|484
*
4V8Q|1|AA|G|496
4V8Q|1|AA|A|497
4V8Q|1|AA|G|498
4V8Q|1|AA|U|499
4V8Q|1|AA|G|500
4V8Q|1|AA|A|501
4V8Q|1|AA|A|502
4V8Q|1|AA|A|503
4V8Q|1|AA|U|504
4V8Q|1|AA|A|505
4V8Q|1|AA|G|506
4V8Q|1|AA|A|507
4V8Q|1|AA|G|508
4V8Q|1|AA|C|509
Current chains
- Chain AA
- 23S ribosomal RNA
Nearby chains
- Chain AW
- 50S RIBOSOMAL PROTEIN L22
- Chain AY
- 50S RIBOSOMAL PROTEIN L24
Coloring options: