IL_4V8Q_028

3D structure

PDB id

4V8Q (explore in PDB, NAKB, or RNA 3D Hub)

Description

Complex of SmpB, a tmRNA fragment and EF-Tu-GDP-Kirromycin with the 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

GA*UCC

Length

5 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V8Q_028 not in the Motif Atlas

Homologous match to IL_7A0S_028

Geometric discrepancy: 0.1406

The information below is about IL_7A0S_028

Detailed Annotation

Minor groove platform

Broad Annotation

No text annotation

Motif group

IL_51454.3

Basepair signature

cWW-cSH-cWW

Number of instances in this motif group

45

Unit IDs

4V8Q|1|AA|G|862
4V8Q|1|AA|A|863
*
4V8Q|1|AA|U|913
4V8Q|1|AA|C|914
4V8Q|1|AA|C|915

Current chains

Chain AA

23S ribosomal RNA

Nearby chains

Chain A0

50S RIBOSOMAL PROTEIN L27

Chain AB

5S ribosomal RNA; 5S rRNA

Chain AQ

50S RIBOSOMAL PROTEIN L16

Chain AZ

50S RIBOSOMAL PROTEIN L25