IL_4V8Q_044
3D structure
- PDB id
- 4V8Q (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Complex of SmpB, a tmRNA fragment and EF-Tu-GDP-Kirromycin with the 70S ribosome
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.1 Å
Loop
- Sequence
- CGAUGAAG*UGGAG
- Length
- 13 nucleotides
- Bulged bases
- 4V8Q|1|AA|U|1211
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_4V8Q_044 not in the Motif Atlas
- Homologous match to IL_7RQB_047
- Geometric discrepancy: 0.1067
- The information below is about IL_7RQB_047
- Detailed Annotation
- Kink-turn
- Broad Annotation
- No text annotation
- Motif group
- IL_70923.2
- Basepair signature
- cWW-tSS-tSH-L-tHS-tHS-cWW
- Number of instances in this motif group
- 28
Unit IDs
4V8Q|1|AA|C|1208
4V8Q|1|AA|G|1209
4V8Q|1|AA|A|1210
4V8Q|1|AA|U|1211
4V8Q|1|AA|G|1212
4V8Q|1|AA|A|1213
4V8Q|1|AA|A|1214
4V8Q|1|AA|G|1215
*
4V8Q|1|AA|U|1234
4V8Q|1|AA|G|1235
4V8Q|1|AA|G|1236
4V8Q|1|AA|A|1237
4V8Q|1|AA|G|1238
Current chains
- Chain AA
- 23S ribosomal RNA
Nearby chains
- Chain AU
- 50S RIBOSOMAL PROTEIN L20
Coloring options: