3D structure

PDB id
4V8Q (explore in PDB, NAKB, or RNA 3D Hub)
Description
Complex of SmpB, a tmRNA fragment and EF-Tu-GDP-Kirromycin with the 70S ribosome
Experimental method
X-RAY DIFFRACTION
Resolution
3.1 Å

Loop

Sequence
GCAAU*AGC
Length
8 nucleotides
Bulged bases
4V8Q|1|AA|G|1332
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_4V8Q_048 not in the Motif Atlas
Homologous match to IL_7RQB_051
Geometric discrepancy: 0.0727
The information below is about IL_7RQB_051
Detailed Annotation
C-loop
Broad Annotation
No text annotation
Motif group
IL_63596.6
Basepair signature
cWW-cWS-cSH-tWH-cWW-L
Number of instances in this motif group
14

Unit IDs

4V8Q|1|AA|G|1319
4V8Q|1|AA|C|1320
4V8Q|1|AA|A|1321
4V8Q|1|AA|A|1322
4V8Q|1|AA|U|1323
*
4V8Q|1|AA|A|1331
4V8Q|1|AA|G|1332
4V8Q|1|AA|C|1333

Current chains

Chain AA
23S ribosomal RNA

Nearby chains

Chain AW
50S RIBOSOMAL PROTEIN L22
Chain AX
50S RIBOSOMAL PROTEIN L23

Coloring options:


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