IL_4V8Q_048

3D structure

PDB id

4V8Q (explore in PDB, NAKB, or RNA 3D Hub)

Description

Complex of SmpB, a tmRNA fragment and EF-Tu-GDP-Kirromycin with the 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

GCAAU*AGC

Length

8 nucleotides

Bulged bases

4V8Q|1|AA|G|1332

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V8Q_048 not in the Motif Atlas

Homologous match to IL_7RQB_051

Geometric discrepancy: 0.0727

The information below is about IL_7RQB_051

Detailed Annotation

C-loop

Broad Annotation

No text annotation

Motif group

IL_63596.6

Basepair signature

cWW-cWS-cSH-tWH-cWW-L

Number of instances in this motif group

14

Unit IDs

4V8Q|1|AA|G|1319
4V8Q|1|AA|C|1320
4V8Q|1|AA|A|1321
4V8Q|1|AA|A|1322
4V8Q|1|AA|U|1323
*
4V8Q|1|AA|A|1331
4V8Q|1|AA|G|1332
4V8Q|1|AA|C|1333

Current chains

Chain AA

23S ribosomal RNA

Nearby chains

Chain AW

50S RIBOSOMAL PROTEIN L22

Chain AX

50S RIBOSOMAL PROTEIN L23