IL_4V8Q_072

3D structure

PDB id

4V8Q (explore in PDB, NAKB, or RNA 3D Hub)

Description

Complex of SmpB, a tmRNA fragment and EF-Tu-GDP-Kirromycin with the 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

UCAAG*CGAAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V8Q_072 not in the Motif Atlas

Homologous match to IL_7RQB_074

Geometric discrepancy: 0.1508

The information below is about IL_7RQB_074

Detailed Annotation

UAA/GAN with extra stack

Broad Annotation

No text annotation

Motif group

IL_90318.1

Basepair signature

cWW-tSH-L-R-L-R-cWW

Number of instances in this motif group

3

Unit IDs

4V8Q|1|AA|U|1851
4V8Q|1|AA|C|1852
4V8Q|1|AA|A|1853
4V8Q|1|AA|A|1854
4V8Q|1|AA|G|1855
*
4V8Q|1|AA|C|1887
4V8Q|1|AA|G|1888
4V8Q|1|AA|A|1889
4V8Q|1|AA|A|1890
4V8Q|1|AA|G|1891

Current chains

Chain AA

23S ribosomal RNA

Nearby chains

Chain AD

50S RIBOSOMAL PROTEIN L2

Chain BW

Transfer RNA; tRNA