IL_4V8Q_075

3D structure

PDB id

4V8Q (explore in PDB, NAKB, or RNA 3D Hub)

Description

Complex of SmpB, a tmRNA fragment and EF-Tu-GDP-Kirromycin with the 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

CGAAAUUCCUUG*CCUG

Length

16 nucleotides

Bulged bases

4V8Q|1|AA|A|1938, 4V8Q|1|AA|U|1944, 4V8Q|1|AA|U|1963

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V8Q_075 not in the Motif Atlas

Homologous match to IL_4WF9_077

Geometric discrepancy: 0.1141

The information below is about IL_4WF9_077

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_42218.2

Basepair signature

cWW-L-R-cHW-cWW-L-L-L-R-L

Number of instances in this motif group

5

Unit IDs

4V8Q|1|AA|C|1934
4V8Q|1|AA|G|1935
4V8Q|1|AA|A|1936
4V8Q|1|AA|A|1937
4V8Q|1|AA|A|1938
4V8Q|1|AA|U|1939
4V8Q|1|AA|U|1940
4V8Q|1|AA|C|1941
4V8Q|1|AA|C|1942
4V8Q|1|AA|U|1943
4V8Q|1|AA|U|1944
4V8Q|1|AA|G|1945
*
4V8Q|1|AA|C|1961
4V8Q|1|AA|C|1962
4V8Q|1|AA|U|1963
4V8Q|1|AA|G|1964

Current chains

Chain AA

23S ribosomal RNA

Nearby chains

Chain AD

50S RIBOSOMAL PROTEIN L2

Chain BA

Small subunit ribosomal RNA; SSU rRNA