IL_4V8Q_088
3D structure
- PDB id
- 4V8Q (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Complex of SmpB, a tmRNA fragment and EF-Tu-GDP-Kirromycin with the 70S ribosome
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.1 Å
Loop
- Sequence
- CUGUGAAC*GGGAG
- Length
- 13 nucleotides
- Bulged bases
- 4V8Q|1|AA|U|2132, 4V8Q|1|AA|G|2133
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_4V8Q_088 not in the Motif Atlas
- Homologous match to IL_3U4M_004
- Geometric discrepancy: 0.3481
- The information below is about IL_3U4M_004
- Detailed Annotation
- Kink-turn
- Broad Annotation
- No text annotation
- Motif group
- IL_90775.2
- Basepair signature
- cWW-tSS-tSH-L-tHS-tHS-cWW
- Number of instances in this motif group
- 30
Unit IDs
4V8Q|1|AA|C|2129
4V8Q|1|AA|U|2130
4V8Q|1|AA|G|2131
4V8Q|1|AA|U|2132
4V8Q|1|AA|G|2133
4V8Q|1|AA|A|2134
4V8Q|1|AA|A|2135
4V8Q|1|AA|C|2136
*
4V8Q|1|AA|G|2155
4V8Q|1|AA|G|2156
4V8Q|1|AA|G|2157
4V8Q|1|AA|A|2158
4V8Q|1|AA|G|2159
Current chains
- Chain AA
- 23S ribosomal RNA
Nearby chains
- Chain AC
- 50S RIBOSOMAL PROTEIN L1
Coloring options: