IL_4V8Q_092

3D structure

PDB id

4V8Q (explore in PDB, NAKB, or RNA 3D Hub)

Description

Complex of SmpB, a tmRNA fragment and EF-Tu-GDP-Kirromycin with the 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

CAG*CGGAG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V8Q_092 not in the Motif Atlas

Homologous match to IL_7RQB_088

Geometric discrepancy: 0.2904

The information below is about IL_7RQB_088

Detailed Annotation

Isolated tHS basepair with bulges

Broad Annotation

No text annotation

Motif group

IL_38958.7

Basepair signature

cWW-tHS-cWW

Number of instances in this motif group

15

Unit IDs

4V8Q|1|AA|C|2297
4V8Q|1|AA|A|2298
4V8Q|1|AA|G|2299
*
4V8Q|1|AA|C|2317
4V8Q|1|AA|G|2318
4V8Q|1|AA|G|2319
4V8Q|1|AA|A|2320
4V8Q|1|AA|G|2321

Current chains

Chain AA

23S ribosomal RNA

Nearby chains

Chain AB

5S ribosomal RNA; 5S rRNA

Chain AG

50S RIBOSOMAL PROTEIN L5

Chain AS

50S RIBOSOMAL PROTEIN L18