IL_4V8Q_099

3D structure

PDB id

4V8Q (explore in PDB, NAKB, or RNA 3D Hub)

Description

Complex of SmpB, a tmRNA fragment and EF-Tu-GDP-Kirromycin with the 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

CCGAG*CGGCG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V8Q_099 not in the Motif Atlas

Homologous match to IL_7RQB_095

Geometric discrepancy: 0.1694

The information below is about IL_7RQB_095

Detailed Annotation

Triple sheared

Broad Annotation

No text annotation

Motif group

IL_56467.8

Basepair signature

cWW-tSH-tSH-tHS-cWW

Number of instances in this motif group

29

Unit IDs

4V8Q|1|AA|C|2466
4V8Q|1|AA|C|2467
4V8Q|1|AA|G|2468
4V8Q|1|AA|A|2469
4V8Q|1|AA|G|2470
*
4V8Q|1|AA|C|2480
4V8Q|1|AA|G|2481
4V8Q|1|AA|G|2482
4V8Q|1|AA|C|2483
4V8Q|1|AA|G|2484

Current chains

Chain AA

23S ribosomal RNA

Nearby chains

Chain A9

50S RIBOSOMAL PROTEIN L36

Chain AQ

50S RIBOSOMAL PROTEIN L16

Chain AZ

50S RIBOSOMAL PROTEIN L25