IL_4V8Q_106
3D structure
- PDB id
- 4V8Q (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Complex of SmpB, a tmRNA fragment and EF-Tu-GDP-Kirromycin with the 70S ribosome
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.1 Å
Loop
- Sequence
- UUGAG*CAAGAUGAG
- Length
- 14 nucleotides
- Bulged bases
- 4V8Q|1|AA|G|2780
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_4V8Q_106 not in the Motif Atlas
- Homologous match to IL_7RQB_102
- Geometric discrepancy: 0.0814
- The information below is about IL_7RQB_102
- Detailed Annotation
- tSH-tHS-tHW
- Broad Annotation
- tSH-tHS-tHW
- Motif group
- IL_04638.1
- Basepair signature
- cWW-tSH-tHW-tHS-cSH-cWW-L
- Number of instances in this motif group
- 5
Unit IDs
4V8Q|1|AA|U|2636
4V8Q|1|AA|U|2637
4V8Q|1|AA|G|2638
4V8Q|1|AA|A|2639
4V8Q|1|AA|G|2640
*
4V8Q|1|AA|C|2774
4V8Q|1|AA|A|2775
4V8Q|1|AA|A|2776
4V8Q|1|AA|G|2777
4V8Q|1|AA|A|2778
4V8Q|1|AA|U|2779
4V8Q|1|AA|G|2780
4V8Q|1|AA|A|2781
4V8Q|1|AA|G|2782
Current chains
- Chain AA
- 23S ribosomal RNA
Nearby chains
- Chain AE
- 50S RIBOSOMAL PROTEIN L3
- Chain AN
- 50S RIBOSOMAL PROTEIN L13
Coloring options: