IL_4V8Q_109

3D structure

PDB id

4V8Q (explore in PDB, NAKB, or RNA 3D Hub)

Description

Complex of SmpB, a tmRNA fragment and EF-Tu-GDP-Kirromycin with the 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

UUUCC*GGUAG

Length

10 nucleotides

Bulged bases

4V8Q|1|AA|U|2689, 4V8Q|1|AA|C|2690

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V8Q_109 not in the Motif Atlas

Homologous match to IL_9DFE_104

Geometric discrepancy: 0.1013

The information below is about IL_9DFE_104

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_23774.1

Basepair signature

cWW-L-R-L-tHS-cWW

Number of instances in this motif group

11

Unit IDs

4V8Q|1|AA|U|2687
4V8Q|1|AA|U|2688
4V8Q|1|AA|U|2689
4V8Q|1|AA|C|2690
4V8Q|1|AA|C|2691
*
4V8Q|1|AA|G|2718
4V8Q|1|AA|G|2719
4V8Q|1|AA|U|2720
4V8Q|1|AA|A|2721
4V8Q|1|AA|G|2722

Current chains

Chain AA

23S ribosomal RNA

Nearby chains

Chain AE

50S RIBOSOMAL PROTEIN L3

Chain AR

50S RIBOSOMAL PROTEIN L17

Chain AT

50S RIBOSOMAL PROTEIN L19