IL_4V8Q_111

3D structure

PDB id

4V8Q (explore in PDB, NAKB, or RNA 3D Hub)

Description

Complex of SmpB, a tmRNA fragment and EF-Tu-GDP-Kirromycin with the 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

GAUAAC*GGAAGC

Length

12 nucleotides

Bulged bases

4V8Q|1|AA|A|2765

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V8Q_111 not in the Motif Atlas

Homologous match to IL_5J7L_350

Geometric discrepancy: 0.1617

The information below is about IL_5J7L_350

Detailed Annotation

UAA/GAN with extra cWW

Broad Annotation

No text annotation

Motif group

IL_49767.8

Basepair signature

cWW-cWW-tWH-L-tHS-cWW

Number of instances in this motif group

6

Unit IDs

4V8Q|1|AA|G|2737
4V8Q|1|AA|A|2738
4V8Q|1|AA|U|2739
4V8Q|1|AA|A|2740
4V8Q|1|AA|A|2741
4V8Q|1|AA|C|2742
*
4V8Q|1|AA|G|2762
4V8Q|1|AA|G|2763
4V8Q|1|AA|A|2764
4V8Q|1|AA|A|2765
4V8Q|1|AA|G|2766
4V8Q|1|AA|C|2767

Current chains

Chain AA

23S ribosomal RNA

Nearby chains

Chain A9

50S RIBOSOMAL PROTEIN L36

Chain AH

50S RIBOSOMAL PROTEIN L6

Chain AN

50S RIBOSOMAL PROTEIN L13