IL_4V8Q_120
3D structure
- PDB id
- 4V8Q (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Complex of SmpB, a tmRNA fragment and EF-Tu-GDP-Kirromycin with the 70S ribosome
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.1 Å
Loop
- Sequence
- UGG*CUG
- Length
- 6 nucleotides
- Bulged bases
- None detected
- QA status
- Self-complementary:
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_4V8Q_120 not in the Motif Atlas
- Geometric match to IL_7A0S_107
- Geometric discrepancy: 0.2988
- The information below is about IL_7A0S_107
- Detailed Annotation
- Isolated non-canonical cWW pair
- Broad Annotation
- Isolated non-canonical cWW pair
- Motif group
- IL_07785.1
- Basepair signature
- cWW-cWW-cWW
- Number of instances in this motif group
- 33
Unit IDs
4V8Q|1|AB|U|80
4V8Q|1|AB|G|81
4V8Q|1|AB|G|82
*
4V8Q|1|AB|C|95
4V8Q|1|AB|U|96
4V8Q|1|AB|G|97
Current chains
- Chain AB
- 5S ribosomal RNA
Nearby chains
- Chain A3
- 50S RIBOSOMAL PROTEIN L30
- Chain AA
- Large subunit ribosomal RNA; LSU rRNA
- Chain AQ
- 50S RIBOSOMAL PROTEIN L16
- Chain AZ
- 50S RIBOSOMAL PROTEIN L25
Coloring options: