IL_4V8Q_123

3D structure

PDB id

4V8Q (explore in PDB, NAKB, or RNA 3D Hub)

Description

Complex of SmpB, a tmRNA fragment and EF-Tu-GDP-Kirromycin with the 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

CCUAAG*UAG

Length

9 nucleotides

Bulged bases

4V8Q|1|BA|C|48, 4V8Q|1|BA|A|51

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V8Q_123 not in the Motif Atlas

Homologous match to IL_4LFB_003

Geometric discrepancy: 0.0846

The information below is about IL_4LFB_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_14177.2

Basepair signature

cWW-L-R-L-cWW

Number of instances in this motif group

2

Unit IDs

4V8Q|1|BA|C|47
4V8Q|1|BA|C|48
4V8Q|1|BA|U|49
4V8Q|1|BA|A|50
4V8Q|1|BA|A|51
4V8Q|1|BA|G|52
*
4V8Q|1|BA|U|359
4V8Q|1|BA|A|360
4V8Q|1|BA|G|361

Current chains

Chain BA

16S ribosomal RNA

Nearby chains

Chain BL

30S RIBOSOMAL PROTEIN S12

Chain BY

Transfer-messenger RNA; tmRNA; 10Sa RNA; SsrA

Chain BZ

ELONGATION FACTOR TU