IL_4V8Q_124
3D structure
- PDB id
- 4V8Q (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Complex of SmpB, a tmRNA fragment and EF-Tu-GDP-Kirromycin with the 70S ribosome
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.1 Å
Loop
- Sequence
- CAUG*CAG
- Length
- 7 nucleotides
- Bulged bases
- 4V8Q|1|BA|A|55
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_4V8Q_124 not in the Motif Atlas
- Geometric match to IL_3C3Z_002
- Geometric discrepancy: 0.3487
- The information below is about IL_3C3Z_002
- Detailed Annotation
- Decoding loop related
- Broad Annotation
- Decoding loop related
- Motif group
- IL_29925.1
- Basepair signature
- cWW-L-R-L-cWW
- Number of instances in this motif group
- 10
Unit IDs
4V8Q|1|BA|C|54
4V8Q|1|BA|A|55
4V8Q|1|BA|U|56
4V8Q|1|BA|G|57
*
4V8Q|1|BA|C|355
4V8Q|1|BA|A|356
4V8Q|1|BA|G|357
Current chains
- Chain BA
- 16S ribosomal RNA
Nearby chains
- Chain BT
- 30S RIBOSOMAL PROTEIN S20
- Chain BY
- Transfer-messenger RNA; tmRNA
- Chain BZ
- ELONGATION FACTOR TU
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