IL_4V8Q_130
3D structure
- PDB id
- 4V8Q (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Complex of SmpB, a tmRNA fragment and EF-Tu-GDP-Kirromycin with the 70S ribosome
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.1 Å
Loop
- Sequence
- GACAAC*GCUAAUC
- Length
- 13 nucleotides
- Bulged bases
- 4V8Q|1|BA|U|173
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_4V8Q_130 not in the Motif Atlas
- Homologous match to IL_4LFB_009
- Geometric discrepancy: 0.0993
- The information below is about IL_4LFB_009
- Detailed Annotation
- tWH-tWH-tHW-tHW
- Broad Annotation
- No text annotation
- Motif group
- IL_12745.1
- Basepair signature
- cWW-tWH-tWH-tHW-tHW-cWW
- Number of instances in this motif group
- 1
Unit IDs
4V8Q|1|BA|G|148
4V8Q|1|BA|A|149
4V8Q|1|BA|C|150
4V8Q|1|BA|A|151
4V8Q|1|BA|A|152
4V8Q|1|BA|C|153
*
4V8Q|1|BA|G|168
4V8Q|1|BA|C|169
4V8Q|1|BA|U|170
4V8Q|1|BA|A|171
4V8Q|1|BA|A|172
4V8Q|1|BA|U|173
4V8Q|1|BA|C|174
Current chains
- Chain BA
- 16S ribosomal RNA
Nearby chains
- Chain BT
- 30S RIBOSOMAL PROTEIN S20
Coloring options: