3D structure

PDB id
4V8Q (explore in PDB, NAKB, or RNA 3D Hub)
Description
Complex of SmpB, a tmRNA fragment and EF-Tu-GDP-Kirromycin with the 70S ribosome
Experimental method
X-RAY DIFFRACTION
Resolution
3.1 Å

Loop

Sequence
CGUAAAG*CG
Length
9 nucleotides
Bulged bases
4V8Q|1|BA|A|572
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_4V8Q_142 not in the Motif Atlas
Homologous match to IL_4LFB_022
Geometric discrepancy: 0.0862
The information below is about IL_4LFB_022
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
IL_38186.6
Basepair signature
cWW-L-cWW-L-L-R
Number of instances in this motif group
4

Unit IDs

4V8Q|1|BA|C|569
4V8Q|1|BA|G|570
4V8Q|1|BA|U|571
4V8Q|1|BA|A|572
4V8Q|1|BA|A|573
4V8Q|1|BA|A|574
4V8Q|1|BA|G|575
*
4V8Q|1|BA|C|880
4V8Q|1|BA|G|881

Current chains

Chain BA
16S ribosomal RNA

Nearby chains

Chain BE
30S RIBOSOMAL PROTEIN S5
Chain BL
30S RIBOSOMAL PROTEIN S12
Chain BQ
30S RIBOSOMAL PROTEIN S17

Coloring options:


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