IL_4V8Q_150
3D structure
- PDB id
- 4V8Q (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Complex of SmpB, a tmRNA fragment and EF-Tu-GDP-Kirromycin with the 70S ribosome
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.1 Å
Loop
- Sequence
- GGAAUU*AGGAAC
- Length
- 12 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_4V8Q_150 not in the Motif Atlas
- Homologous match to IL_4LFB_030
- Geometric discrepancy: 0.0684
- The information below is about IL_4LFB_030
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_04668.2
- Basepair signature
- cWW-cWW-cWW-L-R-L-R-cWW
- Number of instances in this motif group
- 8
Unit IDs
4V8Q|1|BA|G|673
4V8Q|1|BA|G|674
4V8Q|1|BA|A|675
4V8Q|1|BA|A|676
4V8Q|1|BA|U|677
4V8Q|1|BA|U|678
*
4V8Q|1|BA|A|712
4V8Q|1|BA|G|713
4V8Q|1|BA|G|714
4V8Q|1|BA|A|715
4V8Q|1|BA|A|716
4V8Q|1|BA|C|717
Current chains
- Chain BA
- 16S ribosomal RNA
Nearby chains
- Chain AD
- 50S RIBOSOMAL PROTEIN L2
- Chain BF
- 30S RIBOSOMAL PROTEIN S6
- Chain BK
- 30S RIBOSOMAL PROTEIN S11
- Chain BR
- 30S RIBOSOMAL PROTEIN S18
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