IL_4V8Q_151
3D structure
- PDB id
- 4V8Q (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Complex of SmpB, a tmRNA fragment and EF-Tu-GDP-Kirromycin with the 70S ribosome
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.1 Å
Loop
- Sequence
- GAGUAG*CGCAGAUAC
- Length
- 15 nucleotides
- Bulged bases
- 4V8Q|1|BA|C|701, 4V8Q|1|BA|A|702
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_4V8Q_151 not in the Motif Atlas
- Homologous match to IL_4LFB_031
- Geometric discrepancy: 0.1805
- The information below is about IL_4LFB_031
- Detailed Annotation
- Kink-turn
- Broad Annotation
- No text annotation
- Motif group
- IL_95727.1
- Basepair signature
- cWW-L-tSH-L-tHW-tHS-R-cWW-L
- Number of instances in this motif group
- 1
Unit IDs
4V8Q|1|BA|G|683
4V8Q|1|BA|A|684
4V8Q|1|BA|G|685
4V8Q|1|BA|U|686
4V8Q|1|BA|A|687
4V8Q|1|BA|G|688
*
4V8Q|1|BA|C|699
4V8Q|1|BA|G|700
4V8Q|1|BA|C|701
4V8Q|1|BA|A|702
4V8Q|1|BA|G|703
4V8Q|1|BA|A|704
4V8Q|1|BA|U|705
4V8Q|1|BA|A|706
4V8Q|1|BA|C|707
Current chains
- Chain BA
- 16S ribosomal RNA
Nearby chains
- Chain AA
- Large subunit ribosomal RNA; LSU rRNA
- Chain BK
- 30S RIBOSOMAL PROTEIN S11
Coloring options: