IL_4V8Q_152

3D structure

PDB id

4V8Q (explore in PDB, NAKB, or RNA 3D Hub)

Description

Complex of SmpB, a tmRNA fragment and EF-Tu-GDP-Kirromycin with the 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

GGGAG*UC

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V8Q_152 not in the Motif Atlas

Homologous match to IL_4LFB_032

Geometric discrepancy: 0.0748

The information below is about IL_4LFB_032

Detailed Annotation

Left turn

Broad Annotation

Left turn

Motif group

IL_29346.2

Basepair signature

cWW-L-cWW-L-L

Number of instances in this motif group

3

Unit IDs

4V8Q|1|BA|G|774
4V8Q|1|BA|G|775
4V8Q|1|BA|G|776
4V8Q|1|BA|A|777
4V8Q|1|BA|G|778
*
4V8Q|1|BA|U|804
4V8Q|1|BA|C|805

Current chains

Chain BA

16S ribosomal RNA

Nearby chains

Chain AA

Large subunit ribosomal RNA; LSU rRNA

Chain AD

50S RIBOSOMAL PROTEIN L2

Chain BK

30S RIBOSOMAL PROTEIN S11