IL_4V8Q_157
3D structure
- PDB id
- 4V8Q (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Complex of SmpB, a tmRNA fragment and EF-Tu-GDP-Kirromycin with the 70S ribosome
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.1 Å
Loop
- Sequence
- GCA*UUCCC
- Length
- 8 nucleotides
- Bulged bases
- 4V8Q|1|BA|C|934
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_4V8Q_157 not in the Motif Atlas
- Homologous match to IL_4LFB_037
- Geometric discrepancy: 0.2519
- The information below is about IL_4LFB_037
- Detailed Annotation
- Minor groove platform
- Broad Annotation
- No text annotation
- Motif group
- IL_47078.3
- Basepair signature
- cWW-cWS-L-cWW-L
- Number of instances in this motif group
- 4
Unit IDs
4V8Q|1|BA|G|933
4V8Q|1|BA|C|934
4V8Q|1|BA|A|935
*
4V8Q|1|BA|U|1380
4V8Q|1|BA|U|1381
4V8Q|1|BA|C|1382
4V8Q|1|BA|C|1383
4V8Q|1|BA|C|1384
Current chains
- Chain BA
- 16S ribosomal RNA
Nearby chains
- Chain BG
- 30S RIBOSOMAL PROTEIN S7
- Chain BI
- 30S RIBOSOMAL PROTEIN S9
- Chain BV
- Transfer RNA; tRNA
- Chain BX
- MRNA
Coloring options: