IL_4V8Q_162

3D structure

PDB id

4V8Q (explore in PDB, NAKB, or RNA 3D Hub)

Description

Complex of SmpB, a tmRNA fragment and EF-Tu-GDP-Kirromycin with the 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

CGGG*CCUG

Length

8 nucleotides

Bulged bases

None detected

QA status

Self-complementary:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V8Q_162 not in the Motif Atlas

Geometric match to IL_4EYA_010

Geometric discrepancy: 0.2883

The information below is about IL_4EYA_010

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_51479.1

Basepair signature

cWW-L-R-L-cWW

Number of instances in this motif group

10

Unit IDs

4V8Q|1|BA|C|1008
4V8Q|1|BA|G|1009
4V8Q|1|BA|G|1010
4V8Q|1|BA|G|1011
*
4V8Q|1|BA|C|1018
4V8Q|1|BA|C|1019
4V8Q|1|BA|U|1020
4V8Q|1|BA|G|1021

Current chains

Chain BA

16S ribosomal RNA

Nearby chains

Chain BS

30S RIBOSOMAL PROTEIN S19