IL_4V8Q_165
3D structure
- PDB id
- 4V8Q (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Complex of SmpB, a tmRNA fragment and EF-Tu-GDP-Kirromycin with the 70S ribosome
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.1 Å
Loop
- Sequence
- GG*UCAGC
- Length
- 7 nucleotides
- Bulged bases
- 4V8Q|1|BA|C|1200, 4V8Q|1|BA|A|1201
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_4V8Q_165 not in the Motif Atlas
- Homologous match to IL_5J7L_048
- Geometric discrepancy: 0.128
- The information below is about IL_5J7L_048
- Detailed Annotation
- Minor groove platform
- Broad Annotation
- No text annotation
- Motif group
- IL_95583.2
- Basepair signature
- cWW-L-cWW
- Number of instances in this motif group
- 11
Unit IDs
4V8Q|1|BA|G|1057
4V8Q|1|BA|G|1058
*
4V8Q|1|BA|U|1199
4V8Q|1|BA|C|1200
4V8Q|1|BA|A|1201
4V8Q|1|BA|G|1202
4V8Q|1|BA|C|1203
Current chains
- Chain BA
- 16S ribosomal RNA
Nearby chains
- Chain B2
- SMALL PROTEIN B SMPB
- Chain BC
- 30S RIBOSOMAL PROTEIN S3
- Chain BJ
- 30S RIBOSOMAL PROTEIN S10
- Chain BN
- 30S RIBOSOMAL PROTEIN S14
Coloring options: