IL_4V8Q_186

3D structure

PDB id

4V8Q (explore in PDB, NAKB, or RNA 3D Hub)

Description

Complex of SmpB, a tmRNA fragment and EF-Tu-GDP-Kirromycin with the 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

UCG*CGA

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary: UCG,CGA

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V8Q_186 not in the Motif Atlas

Homologous match to IL_5E81_376

Geometric discrepancy: 0.2932

The information below is about IL_5E81_376

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_86319.3

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

269

Unit IDs

4V8Q|1|BW|U|28
4V8Q|1|BW|C|29
4V8Q|1|BW|G|30
*
4V8Q|1|BW|C|42
4V8Q|1|BW|G|43
4V8Q|1|BW|A|44

Current chains

Chain BW

E-SITE or P-SITE TRNA FMET

Nearby chains

Chain BA

Small subunit ribosomal RNA; SSU rRNA

Chain BG

30S RIBOSOMAL PROTEIN S7