IL_4V8Q_213

3D structure

PDB id

4V8Q (explore in PDB, NAKB, or RNA 3D Hub)

Description

Complex of SmpB, a tmRNA fragment and EF-Tu-GDP-Kirromycin with the 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

GGAAG*UGACAAC

Length

12 nucleotides

Bulged bases

4V8Q|1|AA|C|1543

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V8Q_213 not in the Motif Atlas

Homologous match to IL_9DFE_062

Geometric discrepancy: 0.3768

The information below is about IL_9DFE_062

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_09044.1

Basepair signature

cWW-tSH-tHH-L-tHS-cWW

Number of instances in this motif group

1

Unit IDs

4V8Q|1|AA|G|1526
4V8Q|1|AA|G|1527
4V8Q|1|AA|A|1528
4V8Q|1|AA|A|1528|||A
4V8Q|1|AA|G|1529
*
4V8Q|1|AA|U|1540
4V8Q|1|AA|G|1541
4V8Q|1|AA|A|1542
4V8Q|1|AA|C|1543
4V8Q|1|AA|A|1544
4V8Q|1|AA|A|1545
4V8Q|1|AA|C|1546

Current chains

Chain AA

23S ribosomal RNA

Nearby chains