Motif IL_25943.1 Version IL_25943.1 of this group appears in releases 4.0 to 4.0
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name for chain | 1 | 2 | 3 | 4 | 5 | break | 6 | 7 | 8 | 9 | 10 | 1-10 | 2-9 | 3-8 | 4-7 | 5-6 | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_9E6Q_058 | 9E6Q | 0.0898 | 1 | tSH-tHH-tHS (H) | 1 | LSU rRNA | U | 1613 | U | 1614 | A | 1615 | A | 1616 | C | 1617 | * | G | 1665 | G | 1666 | A | 1667 | A | 1668 | A | 1670 | cWW | tWH | tHH | tHS | cWW |
| 2 | IL_9AXU_067 | 9AXU | 0.0818 | 1 | 2 | LSU rRNA | U | 1729 | U | 1730 | A | 1731 | A | 1732 | C | 1733 | * | G | 1787 | G | 1788 | A | 1789 | A | 1790 | A | 1792 | cWW | tWH | tHH | tHS | cWW | |
| 3 | IL_8P9A_299 | 8P9A | 0.0684 | 1 | AR | LSU rRNA | U | 1694 | U | 1695 | A | 1696 | A | 1697 | C | 1698 | * | G | 1747 | G | 1748 | A | 1749 | A | 1750 | A | 1752 | cWW | tWH | tHH | tHS | cWW | |
| 4 | IL_8OI5_073 | 8OI5 | 0.0000 | 1 | 1 | LSU rRNA | U | 1690 | U | 1691 | A | 1692 | A | 1693 | C | 1694 | * | G | 1743 | G | 1744 | A | 1745 | A | 1746 | A | 1748 | cWW | tWH | tHH | tHS | cWW | |
| 5 | IL_9DFE_062 | 9DFE | 0.8320 | 2 | 1A | LSU rRNA | G | 1526 | G | 1527 | A | 1528 | A | 1528|||A | G | 1529 | * | U | 1540 | G | 1541 | A | 1542 | A | 1544 | C | 1546 | cWW | tHH | tHS | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| UUAAC*GGAAGA | 3 |
| UUAAC*GGAAUA | 1 |
| GGAAG*UGACAAC | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| UAA*GAAG | 3 |
| UAA*GAAU | 1 |
| GAA*GACAA | 1 |
Release history
| Release | 4.0 |
|---|---|
| Date | 2025-08-13 |
| Status | New id, 2 parents |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- (4)
- tSH-tHH-tHS (H) (1)
- Basepair signature
- cWW-tWH-tHH-tHS-cWW
- Heat map statistics
- Min 0.07 | Avg 0.31 | Max 0.87
Coloring options: