IL_4V8Q_215

3D structure

PDB id

4V8Q (explore in PDB, NAKB, or RNA 3D Hub)

Description

Complex of SmpB, a tmRNA fragment and EF-Tu-GDP-Kirromycin with the 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

GAAACC*GACUGAC

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V8Q_215 not in the Motif Atlas

Homologous match to IL_4LFB_019

Geometric discrepancy: 0.1275

The information below is about IL_4LFB_019

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_31561.1

Basepair signature

cWW-L-R-tWH-tWH-L-R-L-cWW

Number of instances in this motif group

1

Unit IDs

4V8Q|1|BA|G|450
4V8Q|1|BA|A|451
4V8Q|1|BA|A|452
4V8Q|1|BA|A|453
4V8Q|1|BA|C|454
4V8Q|1|BA|C|455
*
4V8Q|1|BA|G|476
4V8Q|1|BA|A|477
4V8Q|1|BA|C|479
4V8Q|1|BA|U|480
4V8Q|1|BA|G|481
4V8Q|1|BA|A|482
4V8Q|1|BA|C|483

Current chains

Chain BA

16S ribosomal RNA

Nearby chains

Chain BP

30S RIBOSOMAL PROTEIN S16