IL_4V8Q_216

3D structure

PDB id

4V8Q (explore in PDB, NAKB, or RNA 3D Hub)

Description

Complex of SmpB, a tmRNA fragment and EF-Tu-GDP-Kirromycin with the 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

CGGAUU*AUGAAG

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V8Q_216 not in the Motif Atlas

Homologous match to IL_4LFB_055

Geometric discrepancy: 0.1046

The information below is about IL_4LFB_055

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_85536.2

Basepair signature

cWW-tSH-L-R-tHS-cWW-cWW

Number of instances in this motif group

8

Unit IDs

4V8Q|1|BA|C|1303
4V8Q|1|BA|G|1304
4V8Q|1|BA|G|1305
4V8Q|1|BA|A|1306
4V8Q|1|BA|U|1307
4V8Q|1|BA|U|1308
*
4V8Q|1|BA|A|1329
4V8Q|1|BA|U|1330
4V8Q|1|BA|G|1331
4V8Q|1|BA|A|1332
4V8Q|1|BA|A|1333
4V8Q|1|BA|G|1334

Current chains

Chain BA

16S ribosomal RNA

Nearby chains

Chain BM

30S RIBOSOMAL PROTEIN S13

Chain BU

30S RIBOSOMAL PROTEIN THX