IL_4V8T_015
3D structure
- PDB id
- 4V8T (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM Structure of the 60S Ribosomal Subunit in Complex with Arx1 and Rei1
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 8.1 Å
Loop
- Sequence
- GAAC*GAGUGAAAAAGUAC
- Length
- 18 nucleotides
- Bulged bases
- 4V8T|1|5|A|398, 4V8T|1|5|A|402
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_4V8T_015 not in the Motif Atlas
- Homologous match to IL_5TBW_014
- Geometric discrepancy: 0.0427
- The information below is about IL_5TBW_014
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_60992.7
- Basepair signature
- cWW-cWS-tSH-L-tHH-tWH-cWW-tSS-tSH-L-L
- Number of instances in this motif group
- 6
Unit IDs
4V8T|1|5|G|376
4V8T|1|5|A|377
4V8T|1|5|A|378
4V8T|1|5|C|379
*
4V8T|1|5|G|390
4V8T|1|5|A|391
4V8T|1|5|G|392
4V8T|1|5|U|393
4V8T|1|5|G|394
4V8T|1|5|A|395
4V8T|1|5|A|396
4V8T|1|5|A|397
4V8T|1|5|A|398
4V8T|1|5|A|399
4V8T|1|5|G|400
4V8T|1|5|U|401
4V8T|1|5|A|402
4V8T|1|5|C|403
Current chains
- Chain 5
- 25S RIBOSOMAL RNA
Nearby chains
- Chain 8
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain P
- 60S RIBOSOMAL PROTEIN L17-A
- Chain Y
- 60S RIBOSOMAL PROTEIN L26-A
- Chain l
- 60S RIBOSOMAL PROTEIN L39
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