IL_4V8T_016
3D structure
- PDB id
- 4V8T (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM Structure of the 60S Ribosomal Subunit in Complex with Arx1 and Rei1
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 8.1 Å
Loop
- Sequence
- GUGAAAU*ACGGAUC
- Length
- 14 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_4V8T_016 not in the Motif Atlas
- Homologous match to IL_5TBW_015
- Geometric discrepancy: 0.0445
- The information below is about IL_5TBW_015
- Detailed Annotation
- Triple sheared with non-canonical cWW
- Broad Annotation
- Triple sheared
- Motif group
- IL_66414.7
- Basepair signature
- cWW-L-R-tSH-tSH-tHS-cWW-cWW
- Number of instances in this motif group
- 7
Unit IDs
4V8T|1|5|G|404
4V8T|1|5|U|405
4V8T|1|5|G|406
4V8T|1|5|A|407
4V8T|1|5|A|408
4V8T|1|5|A|409
4V8T|1|5|U|410
*
4V8T|1|8|A|13
4V8T|1|8|C|14
4V8T|1|8|G|15
4V8T|1|8|G|16
4V8T|1|8|A|17
4V8T|1|8|U|18
4V8T|1|8|C|19
Current chains
- Chain 5
- 25S RIBOSOMAL RNA
- Chain 8
- 5.8S RIBOSOMAL RNA
Nearby chains
- Chain C
- 60S RIBOSOMAL PROTEIN L4-A
- Chain P
- 60S RIBOSOMAL PROTEIN L17-A
- Chain e
- 60S RIBOSOMAL PROTEIN L30
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