IL_4V8T_027

3D structure

PDB id

4V8T (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM Structure of the 60S Ribosomal Subunit in Complex with Arx1 and Rei1

Experimental method

ELECTRON MICROSCOPY

Resolution

8.1 Å

Loop

Sequence

CUGAUG*CGGAUG

Length

12 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V8T_027 not in the Motif Atlas

Homologous match to IL_5TBW_026

Geometric discrepancy: 0.0642

The information below is about IL_5TBW_026

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_82488.1

Basepair signature

cWW-tSH-tSH-tHS-cWW-cWW

Number of instances in this motif group

7

Unit IDs

4V8T|1|5|C|758
4V8T|1|5|U|759
4V8T|1|5|G|760
4V8T|1|5|A|761
4V8T|1|5|U|762
4V8T|1|5|G|763
*
4V8T|1|5|C|768
4V8T|1|5|G|769
4V8T|1|5|G|770
4V8T|1|5|A|771
4V8T|1|5|U|772
4V8T|1|5|G|773

Current chains

Chain 5

25S RIBOSOMAL RNA

Nearby chains

Chain L

60S RIBOSOMAL PROTEIN L13-A

Chain a

60S RIBOSOMAL PROTEIN L28

Chain o

60S RIBOSOMAL PROTEIN L42-A