IL_4V8T_038
3D structure
- PDB id
- 4V8T (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM Structure of the 60S Ribosomal Subunit in Complex with Arx1 and Rei1
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 8.1 Å
Loop
- Sequence
- CGUAUC*GAAG
- Length
- 10 nucleotides
- Bulged bases
- 4V8T|1|5|A|1103
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_4V8T_038 not in the Motif Atlas
- Homologous match to IL_8C3A_039
- Geometric discrepancy: 0.4645
- The information below is about IL_8C3A_039
- Detailed Annotation
- Kink-turn related
- Broad Annotation
- No text annotation
- Motif group
- IL_59027.1
- Basepair signature
- cWW-L-R-L-cWW-L-L
- Number of instances in this motif group
- 1
Unit IDs
4V8T|1|5|C|977
4V8T|1|5|G|978
4V8T|1|5|U|979
4V8T|1|5|A|980
4V8T|1|5|U|981
4V8T|1|5|C|982
*
4V8T|1|5|G|1101
4V8T|1|5|A|1102
4V8T|1|5|A|1103
4V8T|1|5|G|1104
Current chains
- Chain 5
- 25S RIBOSOMAL RNA
Nearby chains
- Chain F
- 60S RIBOSOMAL PROTEIN L7-A
- Chain Q
- 60S RIBOSOMAL PROTEIN L18-B
- Chain b
- 60S RIBOSOMAL PROTEIN L29
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