IL_4V8T_055
3D structure
- PDB id
- 4V8T (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM Structure of the 60S Ribosomal Subunit in Complex with Arx1 and Rei1
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 8.1 Å
Loop
- Sequence
- AUA*UU
- Length
- 5 nucleotides
- Bulged bases
- 4V8T|1|5|U|1181
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_4V8T_055 not in the Motif Atlas
- Geometric match to IL_5TBW_050
- Geometric discrepancy: 0.0642
- The information below is about IL_5TBW_050
- Detailed Annotation
- Single bulged U
- Broad Annotation
- No text annotation
- Motif group
- IL_83039.19
- Basepair signature
- cWW-L-cWW
- Number of instances in this motif group
- 123
Unit IDs
4V8T|1|5|A|1180
4V8T|1|5|U|1181
4V8T|1|5|A|1182
*
4V8T|1|5|U|1324
4V8T|1|5|U|1325
Current chains
- Chain 5
- 25S RIBOSOMAL RNA
Nearby chains
- Chain F
- 60S RIBOSOMAL PROTEIN L7-A
- Chain M
- 60S RIBOSOMAL PROTEIN L14-A
- Chain O
- 60S RIBOSOMAL PROTEIN L16-A
- Chain S
- 60S RIBOSOMAL PROTEIN L20-A
- Chain f
- 60S RIBOSOMAL PROTEIN L33-A
Coloring options: