IL_4V8T_061

3D structure

PDB id

4V8T (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM Structure of the 60S Ribosomal Subunit in Complex with Arx1 and Rei1

Experimental method

ELECTRON MICROSCOPY

Resolution

8.1 Å

Loop

Sequence

GAGUG*CUC

Length

8 nucleotides

Bulged bases

4V8T|1|5|A|1263

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V8T_061 not in the Motif Atlas

Geometric match to IL_5D8H_003

Geometric discrepancy: 0.114

The information below is about IL_5D8H_003

Detailed Annotation

Major groove platform with extra cWW

Broad Annotation

Major groove platform

Motif group

IL_36931.1

Basepair signature

cWW-cSH-cWW-cWW

Number of instances in this motif group

23

Unit IDs

4V8T|1|5|G|1262
4V8T|1|5|A|1263
4V8T|1|5|G|1264
4V8T|1|5|U|1265
4V8T|1|5|G|1266
*
4V8T|1|5|C|1275
4V8T|1|5|U|1276
4V8T|1|5|C|1277

Current chains

Chain 5

25S RIBOSOMAL RNA

Nearby chains

Chain K

60S RIBOSOMAL PROTEIN L12