IL_4V8T_086

3D structure

PDB id

4V8T (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM Structure of the 60S Ribosomal Subunit in Complex with Arx1 and Rei1

Experimental method

ELECTRON MICROSCOPY

Resolution

8.1 Å

Loop

Sequence

CGUAAC*GGAUAAG

Length

13 nucleotides

Bulged bases

4V8T|1|5|U|1931

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V8T_086 not in the Motif Atlas

Homologous match to IL_5TBW_078

Geometric discrepancy: 0.0482

The information below is about IL_5TBW_078

Detailed Annotation

tSH-tSH-tHH-tHS

Broad Annotation

No text annotation

Motif group

IL_65969.4

Basepair signature

cWW-tSH-L-R-tHH-tHS-cWW

Number of instances in this motif group

7

Unit IDs

4V8T|1|5|C|1918
4V8T|1|5|G|1919
4V8T|1|5|U|1920
4V8T|1|5|A|1921
4V8T|1|5|A|1922
4V8T|1|5|C|1923
*
4V8T|1|5|G|1928
4V8T|1|5|G|1929
4V8T|1|5|A|1930
4V8T|1|5|U|1931
4V8T|1|5|A|1932
4V8T|1|5|A|1933
4V8T|1|5|G|1934

Current chains

Chain 5

25S RIBOSOMAL RNA

Nearby chains

Chain n

60S RIBOSOMAL PROTEIN L41-A

Chain p

60S RIBOSOMAL PROTEIN L43-A