IL_4V8T_100
3D structure
- PDB id
- 4V8T (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM Structure of the 60S Ribosomal Subunit in Complex with Arx1 and Rei1
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 8.1 Å
Loop
- Sequence
- UAG*UGGG
- Length
- 7 nucleotides
- Bulged bases
- 4V8T|1|5|G|2606
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_4V8T_100 not in the Motif Atlas
- Homologous match to IL_5TBW_095
- Geometric discrepancy: 0.0524
- The information below is about IL_5TBW_095
- Detailed Annotation
- Isolated tHS basepair with bulges
- Broad Annotation
- No text annotation
- Motif group
- IL_38958.10
- Basepair signature
- cWW-cWW-cWW-tHS
- Number of instances in this motif group
- 9
Unit IDs
4V8T|1|5|U|2423
4V8T|1|5|A|2424
4V8T|1|5|G|2425
*
4V8T|1|5|U|2604
4V8T|1|5|G|2605
4V8T|1|5|G|2606
4V8T|1|5|G|2607
Current chains
- Chain 5
- 25S RIBOSOMAL RNA
Nearby chains
- Chain A
- 60S RIBOSOMAL PROTEIN L2-B
- Chain N
- 60S RIBOSOMAL PROTEIN L15-A
- Chain o
- 60S RIBOSOMAL PROTEIN L42-A
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