IL_4V8T_102

3D structure

PDB id

4V8T (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM Structure of the 60S Ribosomal Subunit in Complex with Arx1 and Rei1

Experimental method

ELECTRON MICROSCOPY

Resolution

8.1 Å

Loop

Sequence

CCC*GGG

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary: CCC,GGG

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V8T_102 not in the Motif Atlas

Geometric match to IL_7A0S_031

Geometric discrepancy: 0.1917

The information below is about IL_7A0S_031

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_87907.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

179

Unit IDs

4V8T|1|5|C|2566
4V8T|1|5|C|2567
4V8T|1|5|C|2568
*
4V8T|1|5|G|2573
4V8T|1|5|G|2574
4V8T|1|5|G|2575

Current chains

Chain 5

25S RIBOSOMAL RNA

Nearby chains

Chain Z

60S RIBOSOMAL PROTEIN L27-A