IL_4V8T_107
3D structure
- PDB id
- 4V8T (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM Structure of the 60S Ribosomal Subunit in Complex with Arx1 and Rei1
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 8.1 Å
Loop
- Sequence
- GUCC*GC
- Length
- 6 nucleotides
- Bulged bases
- None detected
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_4V8T_107 not in the Motif Atlas
- Homologous match to IL_5TBW_101
- Geometric discrepancy: 0.1744
- The information below is about IL_5TBW_101
- Detailed Annotation
- Single stack bend
- Broad Annotation
- Single stack bend
- Motif group
- IL_39137.1
- Basepair signature
- cWW-L-cWW-L
- Number of instances in this motif group
- 3
Unit IDs
4V8T|1|5|G|2770
4V8T|1|5|U|2771
4V8T|1|5|C|2772
4V8T|1|5|C|2773
*
4V8T|1|5|G|2787
4V8T|1|5|C|2788
Current chains
- Chain 5
- 25S RIBOSOMAL RNA
Nearby chains
- Chain L
- 60S RIBOSOMAL PROTEIN L13-A
- Chain Q
- 60S RIBOSOMAL PROTEIN L18-B
- Chain a
- 60S RIBOSOMAL PROTEIN L28
- Chain o
- 60S RIBOSOMAL PROTEIN L42-A
Coloring options: