IL_4V8T_116

3D structure

PDB id

4V8T (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM Structure of the 60S Ribosomal Subunit in Complex with Arx1 and Rei1

Experimental method

ELECTRON MICROSCOPY

Resolution

8.1 Å

Loop

Sequence

CAU*GCG

Length

6 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V8T_116 not in the Motif Atlas

Geometric match to IL_5TBW_110

Geometric discrepancy: 0.0745

The information below is about IL_5TBW_110

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_44258.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

301

Unit IDs

4V8T|1|5|C|2889
4V8T|1|5|A|2890
4V8T|1|5|U|2891
*
4V8T|1|5|G|2912
4V8T|1|5|C|2913
4V8T|1|5|G|2914

Current chains

Chain 5

25S RIBOSOMAL RNA

Nearby chains

Chain B

60S RIBOSOMAL PROTEIN L3

Chain O

60S RIBOSOMAL PROTEIN L16-A

Chain V

60S RIBOSOMAL PROTEIN L23-A