IL_4V8T_141

3D structure

PDB id

4V8T (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM Structure of the 60S Ribosomal Subunit in Complex with Arx1 and Rei1

Experimental method

ELECTRON MICROSCOPY

Resolution

8.1 Å

Loop

Sequence

AGAG*CGAU

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V8T_141 not in the Motif Atlas

Geometric match to IL_4V9F_100

Geometric discrepancy: 0.1695

The information below is about IL_4V9F_100

Detailed Annotation

Double sheared

Broad Annotation

Double sheared

Motif group

IL_09705.15

Basepair signature

cWW-tSH-tHS-cWW

Number of instances in this motif group

34

Unit IDs

4V8T|1|5|A|3342
4V8T|1|5|G|3343
4V8T|1|5|A|3344
4V8T|1|5|G|3345
*
4V8T|1|5|C|3360
4V8T|1|5|G|3361
4V8T|1|5|A|3362
4V8T|1|5|U|3363

Current chains

Chain 5

25S RIBOSOMAL RNA

Nearby chains

Chain R

60S RIBOSOMAL PROTEIN L19-B