IL_4V8T_154

3D structure

PDB id

4V8T (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM Structure of the 60S Ribosomal Subunit in Complex with Arx1 and Rei1

Experimental method

ELECTRON MICROSCOPY

Resolution

8.1 Å

Loop

Sequence

CGUAU*AAG

Length

8 nucleotides

Bulged bases

4V8T|1|5|A|1103

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V8T_154 not in the Motif Atlas

Homologous match to IL_8P9A_264

Geometric discrepancy: 0.3526

The information below is about IL_8P9A_264

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_25463.1

Basepair signature

cWW-L-cWW-L-L

Number of instances in this motif group

2

Unit IDs

4V8T|1|5|C|977
4V8T|1|5|G|978
4V8T|1|5|U|979
4V8T|1|5|A|980
4V8T|1|5|U|981
*
4V8T|1|5|A|1102
4V8T|1|5|A|1103
4V8T|1|5|G|1104

Current chains

Chain 5

25S RIBOSOMAL RNA

Nearby chains

Chain F

60S RIBOSOMAL PROTEIN L7-A

Chain Q

60S RIBOSOMAL PROTEIN L18-B

Chain b

60S RIBOSOMAL PROTEIN L29